2024. Roberto V Cucalón, Joel B Corush, Matthew L Niemiller, Amanda N Curtis, Pamela B Hart, Bernard R Kuhajda, Matthew R Thomas, Brian Metzke, Mark A Davis, Milton Tan. Population Genomics and Mitochondrial DNA Reveal Cryptic Diversity in North American Spring Cavefishes (Amblyopsidae, Forbesichthys). Conservation Genetics 25: 1283-1301. doi: 10.1007/s10592-024-01640-8
2024. Jemimi Elsherbini, Alexis J Alvey, Corinthia R Black, Ling-Ling S Menez, Milton Tan. Dynamic adaptive evolution and evolutionary modularity and integration in catfishes of the superfamily Doradoidea. Ichthyology & Herpetology 112 (4): 552-566. doi: 10.1643/i2024036
2021. Milton Tan, Anthony K. Redmond, Helen Dooley, Ryo Nozu, Keiichi Sato, Shigehiro Kuraku, Sergey Koren, Adam M. Phillippy, Alistair D.M. Dove, Timothy D. Read. The whale shark genome reveals patterns of vertebrate gene family evolution. eLife 10:e65394. doi: 10.7554/eLife.65394.
2018. Milton Tan, Jonathan W Armbruster. Phylogenetic classification of extant genera of fishes of the order Cypriniformes (Teleostei: Ostariophysi). Zootaxa 4476(1): 006–039. doi: 10.11646/zootaxa.4476.1.4
2016. Carla C Stout, Milton Tan (co-first author), Alan R Lemmon, Emily M Lemmon, Jonathan W Armbruster. Resolving Cypriniformes relationships using an Anchored Hybrid Enrichment approach. BMC Evolutionary Biology 16: 244. doi: 10.1186/s12862-016-0819-5